1. Nelson, D. L., Lehninger, A. L., and Cox, M. M. (2008). Lehninger Principles of Biochemistry, Macmillan.
  2. Atlas, R. M., and Hazen, T. C. (2011). Oil biodegradation and bioremediation: a tale of the two worst spills in U.S. history. Environ. Sci. Technol. 45, 6709–6715.
  3. Bar-Even, A., Flamholz, A., Noor, E., and Milo, R. (2012). Rethinking glycolysis: on the biochemical logic of metabolic pathways. Nat. Chem. Biol. 8, 509–517.
  4. Bar-Even, A., Noor, E., Flamholz, A., Buescher, J. M., and Milo, R. (2011). Hydrophobicity and charge shape cellular metabolite concentrations. PLoS Comput. Biol. 7, e1002166.
  5. van Beilen, J. B., and Funhoff, E. G. (2007). Alkane hydroxylases involved in microbial alkane degradation. Appl. Microbiol. Biotechnol. 74, 13–21.
  6. Buchanan, B. B., Gruissem, W., and Jones, R. L. (2015). Biochemistry and Molecular Biology of Plants, Wiley.
  7. Flamholz, A., Phillips, R., and Milo, R. (2014). The quantified cell. Mol. Biol. Cell 25, 3497–3500.
  8. Goldford, J. E., Hartman, H., Smith, T. F., and Segrè, D. (2017). Remnants of an Ancient Metabolism without Phosphate. Cell 168, 1126–1134.e9.
  9. Gustafson, W. G., Feinberg, B. A., and McFarland, J. T. (1986). Energetics of beta-oxidation. Reduction potentials of general fatty acyl-CoA dehydrogenase, electron transfer flavoprotein, and fatty acyl-CoA substrates. J. Biol. Chem. 261, 7733–7741.
  10. Kim, B. H., and Gadd, G. M. (2008). Bacterial Physiology and Metabolism, Cambridge: Cambridge University Press.
  11. Kostka, J. E., Prakash, O., Overholt, W. A., Green, S. J., Freyer, G., Canion, A., Delgardio, J., Norton, N., Hazen, T. C., and Huettel, M. (2011). Hydrocarbon-degrading bacteria and the bacterial community response in gulf of Mexico beach sands impacted by the deepwater horizon oil spill. Appl. Environ. Microbiol. 77, 7962–7974.
  12. Milo, R. (2009). What governs the reaction center excitation wavelength of photosystems I and II? Photosynth. Res. 101, 59–67.
  13. Nelson, D. L., Lehninger, A. L., and Cox, M. M. (2008). Lehninger Principles of Biochemistry, Macmillan.
  14. Phillips, R. B., Kondev, J., Theriot, J., Orme, N., and Garcia, H. (2009). Physical biology of the cell, Garland Science New York.
  15. Unden, G., and Bongaerts, J. (1997). Alternative respiratory pathways of Escherichia coli: energetics and transcriptional regulation in response to electron acceptors. Biochim. Biophys. Acta 1320, 217–234.
  16. Alberty, R. a., Cornish-Bowden, A., Goldberg, R. N., Hammes, G. G., Tipton, K., and Westerhoff, H. V. (2011). Recommendations for terminology and databases for biochemical thermodynamics. Biophys. Chem. 155, 89–103.
  17. Noor, E., Bar-Even, A. , Flamholz, A. , Reznik, E. , Liebermeister, W. , Milo, R. (2014) Pathway thermodynamics highlights kinetic obstacles in central metabolism. PLoS Comput Biol. 10:e1003483